PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15872A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 320aa    MW: 35544.5 Da    PI: 4.9197
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15872AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-28958150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs+++kl  +s
  Oropetium_20150105_15872A  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSQKLSHFS 58
                               79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.128161IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-27267IPR002100Transcription factor, MADS-box
CDDcd002655.95E-36282No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SQKLSHFSGR  60
RSKAPVNSNV EELQQEIRRY QQQVQLTEER LRLFXXXXXX XXXXNEIEAC EKFLIDTLAR  120
VEDRKQYLLR NHMDPFDPSA ASDMQQVFMP PKXXXXXXXX XXGDDMAAAV NAFVGGDVVS  180
WFDDAMPSIF TGPDPVISFR KVHRGCGPVG WAHLDPAMYD PMRRDPVVDL GMPMCHVDQQ  240
GPSDDWQQAY TSAELLSALI PTTPFPLDNQ DAMAPVLTSP MAPPHMLEPV VEAAGSSSRV  300
PPAAADDDDS LAAGAANIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-18158158MEF2 CHIMERA
6byy_B9e-18158158MEF2 CHIMERA
6byy_C9e-18158158MEF2 CHIMERA
6byy_D9e-18158158MEF2 CHIMERA
6bz1_A9e-18158158MEF2 CHIMERA
6bz1_B9e-18158158MEF2 CHIMERA
6bz1_C9e-18158158MEF2 CHIMERA
6bz1_D9e-18158158MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15872A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117767e-44AK111776.1 Oryza sativa Japonica Group cDNA clone:J023075K19, full insert sequence.
GenBankAP0055457e-44AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11.
GenBankAP0149627e-44AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126097e-44CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankFN6631307e-44FN663130.1 Oryza sativa Japonica Group mRNA for MADS63 protein, cultivar Nipponbare.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305679.11e-118agamous-like MADS-box protein AGL66 isoform X5
TrEMBLA0A194YI311e-117A0A194YI31_SORBI; Uncharacterized protein
STRINGSb10g007810.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-31AGAMOUS-like 104