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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_15648A |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 232aa MW: 25911.4 Da PI: 6.7897 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_15648A | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 87.1 | 9.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien rqvtfskRr+g+lKKA+EL vLCdaev viifs+++kl+eys+
Oropetium_20150105_15648A 9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDAEVGVIIFSENDKLFEYSN 59
79***********************************************95 PP
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| 2 | K-box | 46.4 | 1.7e-16 | 81 | 147 | 9 | 75 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75
++ ++ +++ e+a+L e e+L++ +R +GedL sLs+ +L++Leq++++ l+k+R++K+el +
Oropetium_20150105_15648A 81 KAYRDDQKMLVEMARLMTEKEQLESDHRICIGEDLASLSVDDLNELEQHVQSLLSKVRARKHELQNQ 147
455677999****************************************************998655 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.6E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.258 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.09E-30 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.98E-38 | 2 | 80 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 5.7E-13 | 85 | 155 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 10.541 | 86 | 172 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MGRGRVEMKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD AEVGVIIFSE NDKLFEYSNP 60
RCSMSDLVRQ YETATNAQLD KAYRDDQKML VEMARLMTEK EQLESDHRIC IGEDLASLSV 120
DDLNELEQHV QSLLSKVRAR KHELQNQLLL RHKSHESGRD AAAGDIDQME EMALSGSLEL 180
FPMEPVPVLS TVLQLWPQSD SVGGSGSSSP RGGATSRSRT RASPGCGLQL W*
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