|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Oropetium_20150105_13096A |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
Family |
ERF |
Protein Properties |
Length: 468aa MW: 49294.5 Da PI: 6.8936 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_13096A | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 47.4 | 4.7e-15 | 177 | 228 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g
Oropetium_20150105_13096A 177 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 228
57****************988532...5************************998 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 468 aa
Download sequence Send
to blast |
MRGSELSALV AEPKLEDFLG GISFSEQNHK ANCAMIPSSS GTCYASSGGG TLGARTKEDS 60 SGSGGAGAMV AVSTDTGGSG ASAEAVARKT VDTFGQRTSI YRIDGREDMR LIWGYDKEDK 120 AARAYDLAAL KYWGPTTTTN FPVNNYEKEL EEMKHMTRQE FVASLRRKSS GFSRGASIYR 180 GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY 240 DVKSILESSA LPIGSAAKRL KEAEHQAASA AIVGYDAGRI ASQLGDSAAL AAAYGGAHYH 300 HAAAWPTIAF QPAHAGVAAG LYHPYAQPLR GGWCKQEQDH SVIAAAHSLQ ELHHLNLGGG 360 AVVGAHDFFS PAAAMHGGLG SIDNNAASLE HSTGSNSVVY NGVGGGESNG GSGYMMPAVN 420 TAAVSATTTA MVSHEQVHQA RPQGHEDAKQ AQMAYENFLV NAEAYGSG
|