PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MIKC_MADS

Protein Properties

Length: 210aa MW: 24419.4 Da PI: 7.2561

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13001A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.8	5e-22	9	43	1	35
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35 krien++nrqvtfskRrng+lKKA E+SvLCdaev Oropetium_20150105_13001A 9 KRIENSTNRQVTFSKRRNGLLKKAREISVLCDAEV 43 79********************************9 PP
2	K-box	68.6	2.1e-23	71	167	1	97
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 yq++sgk l+++k++ l+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k +e++ + + + + e Oropetium_20150105_13001A 71 YQTNSGKILWDEKHKILSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTNLNEKLMEHWERCMTHHKILE 154 89999999************************************************************************9999 PP K-box 85 kelqeenkaLrkk 97 +e++ + +++ Oropetium_20150105_13001A 155 DENKLLAFKVHQQ 167 9999888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	27.754	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-27	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-25	2	96	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-21	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-18	10	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-21	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-21	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.2E-14	82	164	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	12.304	84	170	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGLLK KAREISVLCD AEVXXXXXXX XXXXXXXCSP 60 KTSLSRILEK YQTNSGKILW DEKHKILSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE 120 LIMIEEALDN GLTNLNEKLM EHWERCMTHH KILEDENKLL AFKVHQQDIA LSGSMRELEL 180 GYHGDRDFEA QMPITFRVQP SHPNLQENN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00080	ChIP-seq	Transfer from AT5G20240	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13001A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ292959	0.0	AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBank	BT064849	0.0	BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970811.1	1e-128	MADS-box transcription factor 2
Swissprot	Q40702	1e-127	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	K3XM06	1e-127	K3XM06_SETIT; Uncharacterized protein
STRING	Si002929m	1e-128	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3434	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	9e-63	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13001A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]