 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_12157A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
TCP |
| Protein Properties |
Length: 204aa MW: 21509.3 Da PI: 10.1809 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_12157A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 108.1 | 1.4e-33 | 51 | 131 | 9 | 88 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg 88
+++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s s+a +s g
Oropetium_20150105_12157A 51 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSTGPSASTAFHSLLG 131
9********************************************************888884444333333332222222 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 204 aa
Download sequence Send
to blast |
MASREDSATF QLYQPMAAPT PYPAPMSLAE ADAVVVPAPK KPASRGGGKG KDRHSKVNGR 60
GRRVRMPIVC AARVFQLTRE LGLKSDGQTI EWLLRQAEPS ILAATGSGTT PAVFSCSTGP 120
SASTAFHSLL GKRPRQDDVH HEAAAAVAPF WAALQARPVT WGLSPVQEQA AEAYASVAQQ 180
GHHHLNLLSV LSGATRPAEE SSR*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK064708 | 2e-86 | AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence. |
| GenBank | AL663019 | 2e-86 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. |
| GenBank | AP014960 | 2e-86 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
