PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11941A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 483aa    MW: 52653.9 Da    PI: 9.2114
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11941AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.72.4e-26138208272
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                                W k+e+l Li++rrem+ +++++k++k+lWe++s++mre+gf rsp++C++kw+nl k++kk +  +++ +
  Oropetium_20150105_11941A 138 WVKEETLSLIALRREMDAHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSYARSSA 208
                                ***************************************************************99888763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.687130194IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.6E-5131197IPR009057Homeodomain-like
SMARTSM007171.3E-5134196IPR001005SANT/Myb domain
CDDcd122032.73E-29136201No hitNo description
PfamPF138373.6E-18137227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSPSPDPPPV AAFPSRPPGD TARWPRCPSW PARSDGTVAA VRQRIRFSSP PPPLTSISSH  60
TLPATPRRQN PPKAQLPRQC ATPSPSSSYS RAAMLLSGPP AAPTPPLLLP ESSGEDGGGH  120
DSSSRAAGSA PKKRAETWVK EETLSLIALR REMDAHFNTS KSNKHLWEAI SARMREQGFD  180
RSPTMCTDKW RNLLKEFKKA RSYARSSATG AGGNGNAKMA YYKEIDDLLK RRGKAGGSGG  240
SSSGGGAGKS PTSNSKIDSF LQFPTDKANG LTLYSSNLGF EDANIPFGPV EANGRSILGI  300
DDRLDDDRHP LPLTAADAVA TNGVNPWNWR DTSTNGGDNP VTFGGRVILV KWGDYTKRIG  360
IDGTAEAIKE AIKSAFGLRT RRAFWLEDED EVVRTLDRDM PIGTYTLHLD DGMTIKLCTF  420
EDAERMAVRT EDKTFYTEED FRDFLSRRGW TLLREYGGYR IADTLDDLRP GAIYQGMRSL  480
GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-39132224186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11941A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146488.10.0uncharacterized LOC100280076
SwissprotQ9FX531e-145TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLB8A1T00.0B8A1T0_MAIZE; Trihelix transcription factor
STRINGGRMZM2G047370_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-133Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]