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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_10590A |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
C3H |
| Protein Properties |
Length: 461aa MW: 49788.5 Da PI: 7.0199 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_10590A | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 33.6 | 6.5e-11 | 96 | 122 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++ ++GtC++G +CkF+H++
Oropetium_20150105_10590A 96 PGEPDCSYYVKFGTCRFGTKCKFNHPE 122
5789*********************96 PP
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| 2 | zf-CCCH | 34.1 | 4.5e-11 | 218 | 242 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C++++rtG Cky +CkF+H+
Oropetium_20150105_10590A 218 GEKECPYYMRTGSCKYATNCKFHHP 242
6789********************9 PP
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| 3 | zf-CCCH | 20 | 1.2e-06 | 361 | 387 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++Cr+f r+G+Cky rC+++H++
Oropetium_20150105_10590A 361 PGQPECRNFVRSGFCKYKMRCRYHHPR 387
5789*********************96 PP
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| 4 | zf-CCCH | 22.1 | 2.6e-07 | 408 | 433 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C ++ r+G CkyG+ C F+H++
Oropetium_20150105_10590A 408 DQPVCTYYCRFGVCKYGPACMFNHPF 433
6899********************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.4E-5 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.206 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.7E-8 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-5 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.061 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.3E-5 | 218 | 243 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.6E-8 | 218 | 242 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.75E-5 | 220 | 244 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 222 | 241 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0036 | 360 | 387 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.892 | 360 | 388 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-5 | 364 | 390 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.8E-5 | 366 | 390 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.041 | 406 | 433 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.61 | 406 | 434 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.62E-5 | 407 | 433 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-4 | 408 | 433 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MADADAKPPP LGDAAASSPI ASISPSDAAA AAAIEEQLAG LGLAVAGGGA GFEPSGWDDG 60
PAPAVVGDDE VVPCDKVQVA VSSPSADARV RFPRRPGEPD CSYYVKFGTC RFGTKCKFNH 120
PERKKKTRVK GSGGSGSGSN SSSNKASSPD DDQVTKEEYE GLAPDISDSS IAAEPEKGIY 180
FKKLDETNIT NKNKIMKGAK DKRKETIAEG SAQEECKGEK ECPYYMRTGS CKYATNCKFH 240
HPDPSTTSSK EPVEHENGDT SQHNVQGPSQ TNVQIWPDQR AMNEQHIPYL PPQSYNSGMV 300
PPQGLYPSPD WSGYHQVPLN PYYPPGVPFQ HFTAHLNHPM YKTADVPGHQ QVATDDYPER 360
PGQPECRNFV RSGFCKYKMR CRYHHPRSQL PAPAPAGLSP LGLPIKPDQP VCTYYCRFGV 420
CKYGPACMFN HPFNFNFGPP VHAAGPPVPG QYPTPANFTV *
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