PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_09807A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 261aa MW: 28533 Da PI: 10.192

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09807A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.9	3.5e-25	11	60	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k rqv fskRr g++KKA+EL LCdaeva+++fs+ gklyeyss Oropetium_20150105_09807A 11 RIEDKASRQVRFSKRRSGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 60 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-32	2	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.847	2	62	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.49E-33	3	63	No hit	No description
PRINTS	PR00404	8.2E-27	4	24	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-25	4	62	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-24	11	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-27	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-27	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MARRGRVELR RIEDKASRQV RFSKRRSGLF KKAFELALLC DAEVALLVFS PAGKLYEYSS 60 TRFAPTPPPS SSSSSNCLFA RSRSREIAPA QSSSGVGSPF RRTIRSDLIS VTPPSGAPHA 120 TCSRLSPSTG DGCLCDPVLE QRGGNSRSRP YARLAPRVAP TDWPHAERFL VDNLNDDQHE 180 GSDLQSRLSK IATWSTQNNA NETEASELEK LEKLLTNALR DTKTKKIVTT SGFCTQLMLA 240 KNCPGASTSN QNSDASRRQE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	2e-16	4	86	3	92	MEF2 CHIMERA
6bz1_B	2e-16	4	86	3	92	MEF2 CHIMERA
6bz1_C	2e-16	4	86	3	92	MEF2 CHIMERA
6bz1_D	2e-16	4	86	3	92	MEF2 CHIMERA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09807A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184819	5e-63	KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9XJ61	3e-33	MAD51_ORYSJ; MADS-box transcription factor 51

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	4e-23	AGAMOUS-like 14

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09807A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]