![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_09427A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 23275.3 Da PI: 9.9327 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.9 | 4.7e-22 | 17 | 64 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + + Oropetium_20150105_09427A 17 RIESDEARQVCFSKRRAGLFKKASELSTLCGADVAAVVFSPAGKAFSF 64 8******************************************97766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.83E-29 | 8 | 84 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-35 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.338 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.91E-39 | 9 | 77 | No hit | No description |
PRINTS | PR00404 | 8.7E-20 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-20 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-20 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MAPRRPSMGR QKIEIRRIES DEARQVCFSK RRAGLFKKAS ELSTLCGADV AAVVFSPAGK 60 AFSFGHPSVE SILDRFLASS SSSLSSPHND ASSAAAGLTS AGDRAVSELN RQYGELRALL 120 DAEKARQERA DEAMRKERAA NSPAMALIDP DLGAMRYYEL VAFERALTSV QAAVRASADQ 180 LLRDALLVDM MGRRGRQSAT PQLAGAGRGG GVLDFNN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-16 | 8 | 88 | 1 | 76 | MEF2 CHIMERA |
6byy_B | 4e-16 | 8 | 88 | 1 | 76 | MEF2 CHIMERA |
6byy_C | 4e-16 | 8 | 88 | 1 | 76 | MEF2 CHIMERA |
6byy_D | 4e-16 | 8 | 88 | 1 | 76 | MEF2 CHIMERA |
6bz1_A | 3e-16 | 8 | 95 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 3e-16 | 8 | 95 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 3e-16 | 8 | 95 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 3e-16 | 8 | 95 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_09427A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU962654 | 1e-100 | EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806827.1 | 3e-96 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | Q4PSU4 | 1e-33 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1E5VA38 | 8e-97 | A0A1E5VA38_9POAL; Agamous-like MADS-box protein AGL61 | ||||
STRING | Pavir.J11717.1.p | 5e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 9e-32 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_09427A |
Publications ? help Back to Top | |||
---|---|---|---|
|