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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_06640A |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
TCP |
| Protein Properties |
Length: 321aa MW: 33213.2 Da PI: 4.9836 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_06640A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 100.8 | 2.4e-31 | 63 | 138 | 7 | 83 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83
r ++hTkv+gR+RR+Rl a caar+ L++eLG+++d++ti WL+qq++pai ++tgt++ +a ++ +++ +
Oropetium_20150105_06640A 63 RYRDRHTKVEGRGRRIRLAAACAARVARLTRELGHKSDGETIRWLMQQSEPAIVAATGTGTVPAIAT-TVDGVLRLP 138
678********************************************************77777333.222222222 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MGEDEDMMTF YNAAVNDTAA GVGMDATMGS SEAQGPVLPK PESALVEFLG GGLQVANPRP 60
APRYRDRHTK VEGRGRRIRL AAACAARVAR LTRELGHKSD GETIRWLMQQ SEPAIVAATG 120
TGTVPAIATT VDGVLRLPAE PPTAVSDGDQ QQPVPKRRRK LQPTHAAAAA VATAALVPAA 180
PMAYYPVAAD PLLQGSGGGS ISMSSGLAPV SAATVPPGAI PFLAIPATGP GVTGDGKMMQ 240
PTAMWMVPQQ AGAGGAANQP THYWAFPTNP ELFSNYQQQA ASNAEQVVGG GEPQYQQPAG 300
HQNREREDDD IASTDSSSEE *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
