PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03191A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 345aa    MW: 37607.1 Da    PI: 5.9692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03191AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10157202454
                                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                 h   Er+RR+++N +f  Lr +lP+ +      K + a++L +A +Y++ L
  Oropetium_20150105_03191A 157 QHVLSERKRREKLNGSFKDLRAVLPTgP------KKDRASTLIRARDYVNTL 202
                                68889*********************55......999***********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-15151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-12151207No hitNo description
PROSITE profilePS5088813.491153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8157202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13157216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDTESSAAVP ASSSSSTFPS SGSPDEMNSP LIMLTTSCHH QPVDVSSPSL HVPPIAYDNR  60
GLLYGGNLDD DYTIEDLVGE LIVTQEIAHP EQPAAQSKYG RHESGGGAFK PYVRHLSPRK  120
TPKPGACGQR AFKAAMSTLA RMHEARLAHW RNPNQVQHVL SERKRREKLN GSFKDLRAVL  180
PTGPKKDRAS TLIRARDYVN TLKSRVSELE EKNRMLVESL LYKDNDRGEQ DDDYPGEQID  240
VDPTNAAAAE EEETSQEFRL KLVVGSAWNA MDGVVIILRC LREIEDVRLV GMDTGGSGSD  300
GLSPGKDLQI ANVTLQVTLC SYSNNAIYEG HIHNGSTVGG IKIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03191A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809513.11e-76putative transcription factor bHLH041 isoform X2
TrEMBLA0A1E5UQ259e-82A0A1E5UQ25_9POAL; Uncharacterized protein
STRINGSi024546m4e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-18bHLH family protein