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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Oropetium_20150105_02724A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
CO-like |
Protein Properties |
Length: 316aa MW: 33517.2 Da PI: 5.1115 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_02724A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 24.2 | 6.7e-08 | 19 | 56 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
r C+ + ++++l+C+ ++ +lC+ C H g H
Oropetium_20150105_02724A 19 RPCDACAAEPARLHCRADGAYLCPGCDARAH-GagsrHA 56
68**************************999.4466675 PP
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2 | zf-B_box | 23.5 | 1.1e-07 | 58 | 102 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
+ C+ +e+ ++ C+ + lC++C +H+ H++ p
Oropetium_20150105_02724A 58 VWLCEVCEHAPAAVTCRADAAALCATCDADIHSAnplarrHERLP 102
679*****************************6688888898877 PP
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3 | CCT | 69.5 | 8.4e-24 | 244 | 286 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43
Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+
Oropetium_20150105_02724A 244 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKR 286
9****************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MDAAEQKPAA LGYWGVGARP CDACAAEPAR LHCRADGAYL CPGCDARAHG AGSRHARVWL 60 CEVCEHAPAA VTCRADAAAL CATCDADIHS ANPLARRHER LPVAPFFGDA PQQQQPFPSP 120 AFSAAAPGQE EADDDDGSNE AEAASWLLPE PDNSHEDSAT AFFADSDGYL GVDLDFARSM 180 DGIKAIGVPV APPEMDLTGA GAFFYPEHSM NHSVSSSEVA VVPDALAPGA PAAQPAVASK 240 GKEREARLMR YREKRKNRRF DKTIRYASRK AYAETRPRIK GRFAKRCCSA EAEDDDHTVS 300 APAASEGDYG VVPSF*
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