PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G12010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 377aa    MW: 39951.5 Da    PI: 6.345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G12010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd  l+ +v  +G+g +W + ++++g++R++k+c++rw++yl
  ORUFI09G12010.1 14 KGPWAPEEDAALKAYVDAHGTGgNWIALPHKIGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding21.84.5e-0769111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T++Ed l+  +    G++   + a+ ++ gRt++++k++w++
  ORUFI09G12010.1  69 GGFTEDEDRLICSLYIAIGSR-GGALAAQLP-GRTDNDIKNYWNS 111
                      569******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.061966IPR017930Myb domain
SuperFamilySSF466891.31E-2212109IPR009057Homeodomain-like
SMARTSM007178.1E-111364IPR001005SANT/Myb domain
PfamPF002493.3E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221569IPR009057Homeodomain-like
CDDcd001671.25E-71662No hitNo description
SMARTSM007178.5E-567115IPR001005SANT/Myb domain
PROSITE profilePS512948.95367117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-1670117IPR009057Homeodomain-like
CDDcd001675.57E-471113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAPE EDAALKAYVD AHGTGGNWIA LPHKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FTEDEDRLIC SLYIAIGSRG GALAAQLPGR TDNDIKNYWN SKLKRRLLGG  120
GRRPRGAPPR LVLAGPGPAV TAAATSLNAM AASAIERMQL SVRLRRLEAA APPPPQPFTF  180
YGSNNLAAPP WQQPISPAAS GSSEMPRRLH HHHPSGAAAT SSYSGLISSW PSSRSHIIHD  240
AWLDASSTPP LSTTSMGDAA TTTTTAGGES SSSTPTVSTA TTPFIGGSID MDDEIDMLLQ  300
QIRCFDENGD DGDDDADQRL IVGDEAAAGA ENYLRALIDE AAANGGDVGV GSWSSCSTPG  360
VDSVFHEYAQ LDYGQYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056860.0AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03.
GenBankAP0057470.0AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610955.10.0transcription factor MYB36
SwissprotQ9FKL24e-74MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0E0QRR30.0A0A0E0QRR3_ORYRU; Uncharacterized protein
STRINGORUFI09G12010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-68myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]