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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G30260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 900aa MW: 99359.3 Da PI: 6.0897 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.9 | 1.4e-21 | 143 | 233 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F +++ ORUFI04G30260.1 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRTS 233 89*********************999*****9555555.49***********************************************9544 PP | |||||||
2 | Auxin_resp | 89 | 8.6e-30 | 231 | 296 | 18 | 83 |
Auxin_resp 18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 r+s+s Fv++v++++ka++++ svGmRf m+fete+ss+rr++Gtvvg+sd+dp+rWpnSkWr+L+ ORUFI04G30260.1 231 RTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQ 296 799*************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.84E-40 | 133 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-34 | 136 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.02E-19 | 142 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.182 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-19 | 143 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-18 | 143 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.9E-25 | 231 | 296 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.8E-10 | 751 | 884 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.54E-9 | 794 | 876 | No hit | No description |
PROSITE profile | PS51745 | 25.501 | 797 | 881 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence Send to blast |
MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY 60 FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS 120 ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN 180 QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RTSPSPFVIP 240 VARYNKATYM QPSVGMRFAM MFETEESSKR RYTGTVVGIS DYDPMRWPNS KWRNLQVEWD 300 EHGYGERPER VSIWDIETPE NTLVFPSSTL NSKRQCLPGY GVSVPGMEIG SANMSSFPRA 360 QGNPYGSLQH IPAVGSELAI MLLNQSGQTL GSPLSFHQSS YSSIIQNVKQ NYIPPLTVST 420 SACLTKQESL PSDDAQHQFH MANMQNGDLE GSEVQPVIDS ISESKLNATS RDPRNTDSYT 480 SRSTSEQNSK GEPRGKTRRS KKGLPHKTVS EKSDLSSAPS WICDNQQVGL ESKLVGCDEQ 540 VNCGNIEDSS GALTQGNFVG QPHGHQVEQK GVLSPPKVES SKSPDGGKSV NSFPNQGCFS 600 QFIDGLDWMT QPSYYQDSNV IQPAGVSENI FSSSADIPPS MIADTMETFQ ASCLSDCLPN 660 SIQEFISSPD LNSLTFLSPD MQNLEVQLQH DGSNLPSTSN SFVQMSFSEE SASQSANLSG 720 LHMESTHRSI NTTSCSQPMS TGGFDAGMYS KLPRLKESQI LSLPEIHTNS MGTSACSMDA 780 TEYSLDRSAK PMKPPVRTYT KVQKQGSVGR SIDVTGFRNY HELRSAIACM FGLQGKLEHP 840 GSSEWKLVYV DYENDVLLVG DDPWEEFINC VRCIRILSPS EVQQMSENGM HVLNDCIQAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 1 | 319 | 5 | 390 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071292 | 0.0 | AB071292.1 Oryza sativa OsMP mRNA for Arabidopsis Monopteros-like protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881052.1 | 0.0 | auxin response factor 11-like isoform X1 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | A0A0E0PFA6 | 0.0 | A0A0E0PFA6_ORYRU; Auxin response factor | ||||
STRING | ORUFI04G30260.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 1e-165 | ARF family protein |
Publications ? help Back to Top | |||
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