PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0080100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 528aa    MW: 57261.1 Da    PI: 6.5588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0080100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09108133126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C ++ ++G C++G +CkF+H+
  ORGLA12G0080100.1 108 PGEPDCTYYVKFGSCRFGMKCKFNHP 133
                        5789*********************8 PP
2zf-CCCH25.91.8e-08239261325
                        S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                        +e+C++++  G Ck+G  Ck+ H
  ORGLA12G0080100.1 239 QEECKYYSTPGGCKFGKACKYLH 261
                        699******************** PP
3zf-CCCH34.63.3e-11286310226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++++C++++rtG Cky  +CkF+H+
  ORGLA12G0080100.1 286 GEKECPYYMRTGSCKYATNCKFHHP 310
                        7899********************9 PP
4zf-CCCH19.91.3e-06433459127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++f ++G+Ck+  +Ck++H++
  ORGLA12G0080100.1 433 PGQPECQHFVKSGFCKFRMKCKYHHPR 459
                        5789*********************96 PP
5zf-CCCH23.78.3e-08478503227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++ r+G Ck+G+ C ++H++
  ORGLA12G0080100.1 478 DQPVCTYYGRYGVCKFGPACAYNHPF 503
                        6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.258107135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013107134IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6109133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103236264IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4237263IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6239261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4242262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793284312IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5284311IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8286310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6287311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4290309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676432460IPR000571Zinc finger, CCCH-type
SMARTSM003560.028432459IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732476504IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081476503IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5477504IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5478503IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MADADARVPP KSDPGATPIG LISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVAGDEVSGG EKLPGEVAAA VGVEGAAADS RPRFPRRPGE PDCTYYVKFG  120
SCRFGMKCKF NHPARKKKSR VKGSNGGSGS GGSNSSSNKA SSPDDEQQAP KEEYGSYVPD  180
ISPEVDSLGF ADKGSASNLE NFKKYSYEII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE  240
ECKYYSTPGG CKFGKACKYL HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK  300
YATNCKFHHP DPSNVASKDP QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI  360
APSPSYSAGM LPPQGMYPPP EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG  420
HQQVPSEEYP ERPGQPECQH FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP  480
VCTYYGRYGV CKFGPACAYN HPFNFSPVPA AGPPLLPAQY PTPGNYTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0080100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119620.0AK111962.1 Oryza sativa Japonica Group cDNA clone:001-032-B06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620302.10.0zinc finger CCCH domain-containing protein 65 isoform X3
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLI1R5J50.0I1R5J5_ORYGL; Uncharacterized protein
STRINGORGLA12G0080100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-58C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]