PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0013100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 481aa    MW: 54285.5 Da    PI: 7.29
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0013100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.3e-06174195627
                        -SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                        Cr+++++G+Ck+   Ck++H++
  ORGLA12G0013100.1 174 CRYYMKFGECKHMTFCKYNHPK 195
                        ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.319168196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEKYLEDELP GDRDECLRQV EFEKDCWGET SMQLPCRLNK PVKPSVLDAQ SLGVSLIAFR  60
TLSSVKHTSR LCMTGRLGLK KGCLLVEEVG VCIPLFEPDH PNXYKFCANL SISLHSGESL  120
FIVFKTLCWI LFSGXVRWAI MFHLLFQAXQ XKAGVISLLG KLVQYPERPG EPFCRYYMKF  180
GECKHMTFCK YNHPKDRFSC KTTNTIRSES LCLHDQQTTI LENQFGLPSL VDKATANTTN  240
LVASASSSMT PDEIGEGKNN PDEVFVCICG EKLLFHTTSI QRQXKNLSYL LSRGGTSSIV  300
IFMXHGXFQW NMSVWMNLLT VRSVTIIMTC SIMXTFPQNX XTLIRIHGXL FXVISRDISY  360
TNYCNIXMIL LEILLLGSLI SAGFLTCGRH TIIVLITTQR YGPHDILWIX TVAHILPGIS  420
XTISVEVSLQ AAEAAVSQNL EFLLPTIMML MPVYNGPHHW SNDFMEILLN TNSDRSNGQI  480
S
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0013100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149681e-168AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005071e-168BX000507.2 Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA3CEM41e-83C3H64_ORYSJ; Putative zinc finger CCCH domain-containing protein 64
TrEMBLI1R3M50.0I1R3M5_ORYGL; Uncharacterized protein
STRINGORGLA12G0013100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2038288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.23e-10C3H family protein