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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA09G0030300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 26018.6 Da PI: 8.101 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 113 | 160 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 y+G+r+++ +grW++eIrdp+ + r++lg+f+tae+Aa+a++ ++++ ORGLA09G0030300.1 113 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 160 9*******.**********75....44*******************8777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.3E-37 | 112 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.484 | 112 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 113 | 170 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-9 | 113 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.30E-26 | 113 | 168 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-20 | 113 | 170 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRRRVSSSPS SSSSSSPARH HKTRRSRRKL AVDEDWEAAF REFLSRDHDD DDDDDGQHVV 60 LAPLIRGSDK CVHGHEVVAS TVGGGASGGR RRADDDDGER RRRRRREKRS YPYRGIRQRP 120 WGRWASEIRD PVKGIRVWLG TFDTAEGAAR AYDDEVRRIY GGNAKTNFPP SPPPPPPPPE 180 QPAAERSPST TTPTTAEDSG DSRILIECCS DDLMDSLLAA FDMTTGDMRF WS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-18 | 113 | 169 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-18 | 113 | 169 | 6 | 63 | ATERF1 |
3gcc_A | 8e-18 | 113 | 169 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 105 | RRRADDDDGERRRRRRR |
2 | 98 | 106 | ERRRRRRRE |
3 | 99 | 105 | RRRRRRR |
4 | 99 | 106 | RRRRRRRE |
5 | 100 | 108 | RRRRRREKR |
6 | 102 | 107 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA09G0030300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC090056 | 0.0 | AC090056.2 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence. | |||
GenBank | AK065344 | 0.0 | AK065344.1 Oryza sativa Japonica Group cDNA clone:J013007H05, full insert sequence. | |||
GenBank | AP005705 | 0.0 | AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09. | |||
GenBank | AP006758 | 0.0 | AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | EU847519 | 0.0 | EU847519.1 Oryza sativa Japonica Group clone OsEP3 AP2/ERF domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651344.1 | 1e-101 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | I1QMM4 | 1e-165 | I1QMM4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA09G0030300.1 | 1e-165 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17972 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 8e-26 | ERF family protein |