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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA09G0030300.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 232aa MW: 26018.6 Da PI: 8.101 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA09G0030300.1 | genome | AGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 113 | 160 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
y+G+r+++ +grW++eIrdp+ + r++lg+f+tae+Aa+a++ ++++
ORGLA09G0030300.1 113 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 160
9*******.**********75....44*******************8777766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MRRRVSSSPS SSSSSSPARH HKTRRSRRKL AVDEDWEAAF REFLSRDHDD DDDDDGQHVV 60 LAPLIRGSDK CVHGHEVVAS TVGGGASGGR RRADDDDGER RRRRRREKRS YPYRGIRQRP 120 WGRWASEIRD PVKGIRVWLG TFDTAEGAAR AYDDEVRRIY GGNAKTNFPP SPPPPPPPPE 180 QPAAERSPST TTPTTAEDSG DSRILIECCS DDLMDSLLAA FDMTTGDMRF WS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 89 | 105 | RRRADDDDGERRRRRRR |
2 | 98 | 106 | ERRRRRRRE |
3 | 99 | 105 | RRRRRRR |
4 | 99 | 106 | RRRRRRRE |
5 | 100 | 108 | RRRRRREKR |
6 | 102 | 107 | RRRREK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC090056 | 0.0 | AC090056.2 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence. |
GenBank | AK065344 | 0.0 | AK065344.1 Oryza sativa Japonica Group cDNA clone:J013007H05, full insert sequence. |
GenBank | AP005705 | 0.0 | AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09. |
GenBank | AP006758 | 0.0 | AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05. |
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
GenBank | EU847519 | 0.0 | EU847519.1 Oryza sativa Japonica Group clone OsEP3 AP2/ERF domain protein mRNA, complete cds. |