PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0073600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 363aa    MW: 38092.6 Da    PI: 7.1939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0073600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20186234355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  ORGLA06G0073600.1 186 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 234
                        9******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-37185248IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22185243IPR016177DNA-binding domain
PROSITE profilePS5103223.446185242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32185243IPR001471AP2/ERF domain
CDDcd000184.54E-31186242No hitNo description
PRINTSPR003676.5E-11186197IPR001471AP2/ERF domain
PfamPF008473.5E-13186234IPR001471AP2/ERF domain
PRINTSPR003676.5E-11208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAAIDLYKYQ LSSSSSSSSS DQELMKALEP FIRSASPTST STSTSTPLFY SSSSISTTTT  60
TPFSYSSPLP QESYYLPASS SYAAIVPPPT TTTNTTTSFS ELPPLPPSSS SFASPANAAA  120
VGLAHLGPEQ IQQIQVQFLM QQQLQQRGMA ASASASASAA ASYLGPRAQP MKQAGAAAAA  180
AGGKMYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAED AALAYDKAAF RLRGDAARLN  240
FPTLRRGGAH LAGPLHASID AKLTAICHSL AAAPPASSKK AAAAAAHPDS PKGSASTTTT  300
TSEGDESAIS ACSPPLPPPP PPPPAALPEM ANLDFTEAPW DESDAFHLYK CPSWEIDWDS  360
ILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22181242163ATERF1
3gcc_A4e-22181242163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0073600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644288.11e-147ethylene-responsive transcription factor RAP2-13
TrEMBLI1Q0S30.0I1Q0S3_ORYGL; Uncharacterized protein
STRINGORGLA06G0073600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-42related to AP2 4