PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0161000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 396aa    MW: 41539.2 Da    PI: 6.2258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0161000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-17163210555
                AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        GVr ++ +g+++AeIrd + ng  +r++lg+f t+e+Aa a+++a+++ +g
  ORGLA05G0161000.1 163 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFNTPEQAALAYDQAALSVRG 210
                        9*****.**********44465..***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.705160218IPR001471AP2/ERF domain
PRINTSPR003671.9E-7161172IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20162219IPR016177DNA-binding domain
SMARTSM003807.9E-29163224IPR001471AP2/ERF domain
CDDcd000181.00E-20163218No hitNo description
PfamPF008479.2E-12163210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-26163219IPR001471AP2/ERF domain
PRINTSPR003671.9E-7184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEPNYSDYHP NSVPFDAYYE HGHGHLDDHG HGHHHLIPAH PEPSYSYGNW SFLHADATAT  60
SSSESSSASA SSGAAHIVGA SGPSASFVRQ LHFGGEYYDD DAADISALME AASISCWTTN  120
GGAGASTSQT TGLEGVEVMR RAAAPAPDNG SSDKEEAARP LIGVRKRPWG KYAAEIRDST  180
RNGARVWLGT FNTPEQAALA YDQAALSVRG PGAVLNYPLH RVRESLRTLE LGAAAAASES  240
PVLTLKRRHR IRKRSTTKKA PASKEADEAP ATTSSEGKKK RQVNTTSHSH DGAWRRHLLS  300
SGRLSTEGST AAGGRGGLAG GRGEAAGSNM HAADDDEDGE AAAGSSVHVA NDDDDGSEAA  360
AVSSMHAADN DDEAVAGSGV RXXXXXXXXX XXXXXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22163220865ATERF1
3gcc_A3e-22163220865ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0161000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306020.0AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638626.10.0ethylene-responsive transcription factor ERF094
TrEMBLI1PW620.0I1PW62_ORYGL; Uncharacterized protein
STRINGORGLA05G0161000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-35ethylene response factor 1