![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA04G0254300.1 | ||||||||
Common Name | sh4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 330aa MW: 35936.2 Da PI: 8.9768 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54.1 | 4.2e-17 | 7 | 93 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrr.gk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt +e+l Li+a+r +++r g +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ ORGLA04G0254300.1 7 WTLHETLILITAKRLDDDRRAGvGGgaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 93 *************9666655531224455667777777777*****************************************99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.829 | 1 | 80 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 6.9E-11 | 6 | 91 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
DYRKGNWTLH ETLILITAKR LDDDRRAGVG GGAAAGGGGA GSPPTPRSAE QRWKWVENYC 60 WKNGCLRSQN QCNDKWDNLL RDYKKVRDYE SRVAAAAVTG GAAAANSAPL PSYWTMERHE 120 RKDCNLPTNL APEVYDALSE VLSRRAARRG GATIAPTPPP PPLALPPPPP PPSPPKPLVA 180 QQHHHHHGHH HHPPPPQPPP SSLQLPPAVV APPPASVSAE EEMSGSSESG EEEEGSGGEP 240 EAKRRRLSRL GSSVVRSATV VARTLVACEE KRERRHRELL QLEERRLRLE EERTEVRRQG 300 FAGLIAAVNS LSSAIHALVS DHRSGDSSGR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 242 | 246 | KRRRL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA04G0254300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF203243 | 0.0 | EF203243.1 Oryza rufipogon shattering 1 (SHA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448740.2 | 1e-108 | trihelix transcription factor ASR3 | ||||
TrEMBL | D9YVL2 | 0.0 | D9YVL2_ORYGL; Putative shattering protein | ||||
STRING | ORGLA04G0254300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31310.1 | 5e-41 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|