PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0253300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 862aa    MW: 93719.5 Da    PI: 6.6202
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0253300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-183390457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  ORGLA03G0253300.1 33 YVRYTPEQVEALERVYGECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 90
                       6789****************************************************97 PP
2START174.47.2e-551813882204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g++
  ORGLA03G0253300.1 181 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTI 271
                        68999*****************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+++++++
  ORGLA03G0253300.1 272 ELIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPE 363
                        *************999****************************9999999***************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s  + ++k++ a+l++ +
  ORGLA03G0253300.1 364 VLRPLYESPKILAQKMTIAALRHIR 388
                        ********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2562791IPR001356Homeobox domain
SMARTSM003892.7E-152995IPR001356Homeobox domain
SuperFamilySSF466891.5E-163194IPR009057Homeodomain-like
CDDcd000865.37E-163292No hitNo description
PfamPF000461.0E-153390IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-183490IPR009057Homeodomain-like
CDDcd146861.83E-684123No hitNo description
PROSITE profilePS5084827.274171371IPR002913START domain
CDDcd088751.87E-69175391No hitNo description
Gene3DG3DSA:3.30.530.204.0E-24179371IPR023393START-like domain
SMARTSM002342.3E-47180390IPR002913START domain
PfamPF018521.2E-52181388IPR002913START domain
SuperFamilySSF559615.49E-39181391No hitNo description
SuperFamilySSF559617.55E-5428512No hitNo description
SuperFamilySSF559617.55E-5542615No hitNo description
PfamPF086701.9E-49716861IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MAAAMVAAVH GVGRQDRSSP GGGGAPQVDT GKYVRYTPEQ VEALERVYGE CPKPSSLRRQ  60
QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNKL LMEENDRLQK  120
QVSRLVYENG YMRQQLHNPS VATTDTSCES VVTSGQHHQQ QNPAATRPQR DANNPAGLLA  180
IAEETLAEFL SKATGTAVDW VQMVGMKPGP DSIGIIAVSH NCSGVAARAC GLVSLEPTKV  240
AEILKDRPSW YRDCRCVDVL HVIPTGNGGT IELIYMQTYA PTTLAAPRDF WILRYTSGLE  300
DGSLVICERS LTQSTGGPSG PNTPNFVRAE VLPSGYLIRP CEGGGSMIHI VDHVDLDAWS  360
VPEVLRPLYE SPKILAQKMT IAALRHIRQI AHESSGEMPY GGGRQPAVLR TFSQRLSRGF  420
NDAVNGFPDD GWSLMSSDGA EDVTIAFNSS PNKLVGSHVN SSQLFSAIGG GILCAKASML  480
LQNVPPALLV RFLREHRSEW ADPGVDAYSA AALRASPYAV PGLRAGGFMG SQVILPLAHT  540
LEHEEFLEVI RLEGHSLCHD EVVLSRDMYL LQLCSGVDEN AAGACAQLVF APIDESFADD  600
APLLPSGFRV IPLDGKTDAP SATRTLDLAS TLEVGSGGTT RASSDTSSTC NTRSVLTIAF  660
QFSYENHLRE SVAAMARQYV RTVVASVQRV AMAIAPSRLG GQIETKNPPG SPEAHTLARW  720
IGRSYRFHTG ADLLRTDSQS TDSSLKAMWQ HSDSIMCCSL KVSAAAPVFT FANQAGLDML  780
ETTLIALQDI SLEKILDDDG RKALCTEFPK IMQQGFAYLP GGVCVSSMGR PVSYEQAVAW  840
KVLSDDDTPH CLAFMFVNWS FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0253300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632484.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLI1PDT70.0I1PDT7_ORYGL; Uncharacterized protein
STRINGORGLA03G0253300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]