PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0143400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 159aa    MW: 18224.8 Da    PI: 11.6898
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0143400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.91.9e-123378348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                       +WT+eEd  l ++  + G+++W+++a++m+  +R++ qc++rw+++l
  ORGLA03G0143400.1 33 AWTPEEDAVL-RLAMENGSRHWRRVAAKMPrRRRSPAQCRDRWRDHL 78
                       7*****9877.5667899999***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0162682IPR017930Myb domain
SMARTSM007172.2E-73080IPR001005SANT/Myb domain
PfamPF002491.5E-113378IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-1533132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-153390IPR009057Homeodomain-like
CDDcd001674.94E-93378No hitNo description
SMARTSM007173.783134IPR001005SANT/Myb domain
PfamPF139213.3E-587133No hitNo description
PROSITE profilePS500905.80887132IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-591131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDMELSSSST TVASSPASPP LGRCVVRIRL PPAWTPEEDA VLRLAMENGS RHWRRVAAKM  60
PRRRRSPAQC RDRWRDHLAR DVFHRHFTSA DDTELARLCL HLDDAGHRWK HVSRAVYGRS  120
SCAVKRRWRE LRKSDAFLSA LWRPRTTAPT ANAAITTTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A5e-13251281103MYB21
3osf_D5e-13251281103MYB21
3osg_A5e-13251281103MYB21
3osg_D5e-13251281103MYB21
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0143400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131230.0AC213123.1 Oryza glaberrima clone OG_BBa0005O15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629497.11e-101transcription factor MYB44-like
TrEMBLI1PAN81e-109I1PAN8_ORYGL; Uncharacterized protein
STRINGORGLA03G0143400.11e-110(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-11myb domain protein r1