PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0064600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 299aa    MW: 31951 Da    PI: 6.3048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0064600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.5e-21113163256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  ORGLA03G0064600.1 113 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRGE 163
                        59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.13E-35112172No hitNo description
SuperFamilySSF541714.25E-23113171IPR016177DNA-binding domain
PROSITE profilePS5103223.696113170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-33113171IPR001471AP2/ERF domain
SMARTSM003806.1E-39113176IPR001471AP2/ERF domain
PRINTSPR003672.6E-11114125IPR001471AP2/ERF domain
PfamPF008476.7E-15114163IPR001471AP2/ERF domain
PRINTSPR003672.6E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MATTVDWCGR GSNLPAAMYD MVVDSKELMG ALAPSMVSFS YPCSEQSASS LLAGANYLTP  60
AQVLHVQAQL QRLRRPGAAS GCLAAAPPLP MKRHGAVAVA AAAAAAARAP VKLYRGVRQR  120
HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDSAAFRL RGESARLNFP ELRRGGAHLG  180
PPLHAAVDAK LHAICHGMDL PQPQPQTQSN ATTTTMSTTA TNTPSPFFSS ESPVVKSEPD  240
CSASESSSSA DGDVSSTGSS DVVPEMQLLD FSEAPWDESE SFLLHKYPSL EIDWDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20109170163ATERF1
3gcc_A1e-20109170163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0064600.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104800.0AC210480.2 Oryza glaberrima clone OG_BBa0067M08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629130.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLI1P8F00.0I1P8F0_ORYGL; Uncharacterized protein
STRINGORGLA03G0064600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-43related to AP2 4