PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0058800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 317aa    MW: 33314.8 Da    PI: 4.8939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0058800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-1891141155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y GVr+++ +g+W+AeIrdp+e     r++lg+f tae Aa a++aa++ l+g
  ORGLA03G0058800.1  91 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAEAAAHAYDAAARDLRG 141
                        79********.**********866...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.78E-1491148No hitNo description
SuperFamilySSF541716.47E-2291150IPR016177DNA-binding domain
PfamPF008472.7E-1191141IPR001471AP2/ERF domain
SMARTSM003804.7E-3392155IPR001471AP2/ERF domain
PROSITE profilePS5103223.47292149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3092151IPR001471AP2/ERF domain
PRINTSPR003673.0E-993104IPR001471AP2/ERF domain
PRINTSPR003673.0E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCGGAILANI IPATPPRRAT AAHVWPGGDG EKRRKVGGGG CDDDFQAAFE RFGREDSEME  60
EEEVEEVVVG KKAAVRRRRA APAAGRRARP SKYWGVRRRP WGKWAAEIRD PVEGVRVWLG  120
TFATAEAAAH AYDAAARDLR GATAKLNFPS SSSSTAATPR PRKCRPTTAT ATPKATTPNV  180
VVVVNLVDEE AEASESSGAS SSALPDFSWQ GMSASSDDDA AAQQALLDAA GGAKKRPRSE  240
PHVTSNDEVL PASFDSDNNT AAAGLLPLDD PFLFGDLNGG AFASLMDGLF AAGEANVAGE  300
SVGLWSFGDD CLNASYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18881531076Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0058800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0796330.0AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630586.11e-149ethylene-responsive transcription factor ERF073
TrEMBLI1P8920.0I1P892_ORYGL; Uncharacterized protein
STRINGORGLA03G0058800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-18ERF family protein