PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0166200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 394aa    MW: 43304 Da    PI: 7.4369
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0166200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.57.5e-32861802103
                        HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
       HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                        F+ k+ye++ d+ ++ ++sw    +g sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  ORGLA01G0166200.1  86 FVAKTYEMVADAGTDAVVSWGpgGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANEAFLAGQK 168
                        9********************655679*****************************************99.........************* PP

                        XXXXXXXXXXXX CS
       HSF_DNA-bind  92 ellekikrkkse 103
                        +ll++ikr++ +
  ORGLA01G0166200.1 169 HLLKNIKRRRVS 180
                        ********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-3482177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5382177IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3082177IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-1786109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-2886177IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-17126138IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340127151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-17139151IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
AXTPNTSRSP RRASHMASSS SSLCRLLIPR PTTRRFSRGG EGGMAAAPVK REVKPEAGEG  60
WGGGDLGVVP PPRPMEGLGE AGPAPFVAKT YEMVADAGTD AVVSWGPGGS GASFVVWDPH  120
ALAAGVLPRF FKHANFSSFV RQLNTYGFRK VTPDRWEFAN EAFLAGQKHL LKNIKRRRVS  180
KPLMDSQLRN KTSVVFGQPE APGEVVSLKR DRAALRAEVI MLKQQYNACK SQLIAMEEMV  240
RNIERRQQQT ISFFAKVLTN PVFVQQVLLN YVNKNGLRGT AKRQRLMENE EQHADSPLNK  300
GMEAASVMEA DVSPGSTGCG TVGKVETTPM CNFQNIENLC DDVWEELDAL PETGMEQEDK  360
AGIGSFDVEE FVGRPCGWVD DCPYLVEPMQ FVEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-236217710129Heat shock factor protein 1
5d5v_B5e-236217710129Heat shock factor protein 1
5d5v_D5e-236217710129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176LKNIKRR
2174178KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0166200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642710.0AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631502.10.0heat stress transcription factor A-6a
SwissprotQ657C00.0HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLI1NP720.0I1NP72_ORYGL; Uncharacterized protein
STRINGORGLA01G0166200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-74heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]