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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0069400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 40779.6 Da PI: 4.5146 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 150 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAak ++ a+ +l+g ORGLA01G0069400.1 150 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDTAAIQLRG 200 689*******.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-11 | 150 | 200 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.22E-29 | 150 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 151 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 151 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 151 | 208 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-21 | 151 | 209 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.2E-10 | 152 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 174 | 190 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MMMWPLEMEE EGFVALKRTE HVEVTSLAVA VEATPSAKGG KGKVVVGGGG AGGGVGPTRV 60 RVFCDDFDAT DSSSDEDEEE EVTARRRVKR YVQEIRLQRA AAVAVPPVKV KGEEVFPAAV 120 SAKMAEAAKA RVVLAAGRKR KAGGVDGAEP RFRGVRRRPW GKYAAEIRDP WRRVRVWLGT 180 FDTAEEAAKV YDTAAIQLRG RDATTNFNQS GDSASLDVPP EVAERVPQPP GASKNASPAT 240 SYDSGEESHA AAASPTSVLR SFPPSAVVAT ADTANKKQPP PPPLVVRETD ESVDVFGCSF 300 SDDAGFAGEL PPLYTDFDLL ADFPEPPLDF LSNLPVEPFS LAPFSSNNGS PDLHLDDAPS 360 PAAAQVDDFF QDITDLFQIP VV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 144 | 207 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0069400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101054 | 0.0 | AK101054.1 Oryza sativa Japonica Group cDNA clone:J033015K21, full insert sequence. | |||
GenBank | AK106517 | 0.0 | AK106517.1 Oryza sativa Japonica Group cDNA clone:002-107-B02, full insert sequence. | |||
GenBank | AP001800 | 0.0 | AP001800.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0443E05. | |||
GenBank | AP002835 | 0.0 | AP002835.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0417G05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629650.1 | 0.0 | ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | I1NLF4 | 0.0 | I1NLF4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0069400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 4e-29 | cytokinin response factor 2 |