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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC12G08600.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
M-type_MADS |
| Protein Properties |
Length: 183aa MW: 20023.1 Da PI: 10.6321 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC12G08600.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 68.9 | 4.9e-22 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
ri+nk +rqvtf+kRr g++KKA+EL L++a vav++fs+ ++ y +
OPUNC12G08600.1 19 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVVVFSEANHTYAF 66
8******************************************99987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 183 aa
Download sequence Send
to blast |
MAHLLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVVVFSEA 60
NHTYAFGHLS VDAVLRSYAP VPGEAAAAAP VPVHGEDVDL HWLRIAADEI GAQVAAEQAR 120
MRGVAAQIVQ AKAGRRFWWE ADVDALGEAQ LPEFVKALKK LRDNVGRHVN ALLAPQPPPL 180
LLQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL713942 | 0.0 | AL713942.4 Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
