 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC10G17630.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 352aa MW: 38130.9 Da PI: 6.2389 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC10G17630.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 170.5 | 5.2e-53 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++
OPUNC10G17630.1 6 LPPGFRFHPTDDELVGYYLKRKVDSLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATSTGYWKATGKDRKI 98
79****************************.99**************95334445667************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ge+ gl+ktLvfykgrap ge+tdWvmheyrl
OPUNC10G17630.1 99 AC-AGEVFGLRKTLVFYKGRAPGGERTDWVMHEYRL 133
**.999****************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008283 | Biological Process | cell proliferation |
| GO:0071365 | Biological Process | cellular response to auxin stimulus |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MGTMTLPPGF RFHPTDDELV GYYLKRKVDS LKIELEVIPV IDLYKFEPWE LPEKSFLPKR 60
DLEWFFFCPR DRKYPNGSRT NRATSTGYWK ATGKDRKIAC AGEVFGLRKT LVFYKGRAPG 120
GERTDWVMHE YRLCQDLAHG VSNFIGAYAL CRVIKRHEAG LHGEPAAKAK GMIGGSGGGG 180
HRFSGGQMSK VSSSSSLVTV DHQLSRGNAS PSFTPTNNGS PSLVDEMFGG GGDPFQQLRS 240
CVPYPGGDAC GFDLPPLCMP HEPQDPFFAD AGFPPAAAAN EAQTTQAAPP LYGDVMGSVS 300
EHELKWDSLG GYSGGGGELW NAAAAAPLLC RQASDGDDLT AWFAADDNMS VF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 8e-53 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-53 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-53 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-53 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 9e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_B | 9e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_C | 9e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_D | 9e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_A | 9e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_B | 9e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_C | 9e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_D | 9e-53 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 4dul_A | 8e-53 | 1 | 160 | 12 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 8e-53 | 1 | 160 | 12 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CT833246 | 0.0 | CT833246.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI238F12, full insert sequence. |
| GenBank | CT833247 | 0.0 | CT833247.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241J15, full insert sequence. |
