PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G10710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 240aa MW: 27274.7 Da PI: 8.0047 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.4 | 2.7e-27 | 96 | 150 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k rl Wt++LH++F++av++L G++kA+Pk+il +mkvk Lt+e+v+SHLQkYR++ OPUNC10G10710.1 96 KSRLTWTSQLHRQFISAVNHL-GEDKAVPKKILGIMKVKHLTREQVASHLQKYRTH 150 68*******************.********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 7.1E-9 | 1 | 59 | No hit | No description |
PROSITE profile | PS50110 | 13.717 | 1 | 39 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 2.65E-6 | 3 | 46 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS51294 | 11.721 | 93 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-18 | 94 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-27 | 95 | 153 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-25 | 96 | 150 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.2E-7 | 98 | 148 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MASRGDTSTV MKYIANGASD FLLKPVRIEE LSNIWQHVFR KQMRDHSVNN PPIAMAPPTP 60 AITRTAGEAN SAPLENEVRD MINNNGEITD IRDLRKSRLT WTSQLHRQFI SAVNHLGEDK 120 AVPKKILGIM KVKHLTREQV ASHLQKYRTH MKRSIATTSK YVSTLPSSTA LNKTQNHSSK 180 SKCFDQDGCM EITDYSLPRD DLSSGSECML EEQNGYSSEG FQDFQWDSDK QEYGPCFWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-18 | 95 | 153 | 4 | 62 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC609252 | 1e-170 | KC609252.1 Oryza punctata early heading date 1 (Ehd1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876814.1 | 1e-138 | two-component response regulator ORR30 | ||||
Swissprot | Q7Y0W3 | 1e-140 | EHD1_ORYSI; Two-component response regulator EHD1 | ||||
TrEMBL | A0A0E0M8E4 | 0.0 | A0A0E0M8E4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G10710.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11222 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 6e-32 | response regulator 2 |