PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G07360.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 265aa    MW: 27977.4 Da    PI: 4.5021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G07360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.37.9e-08110134227
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.k 27 
                      +++GVr ++ +g+W+AeIrdp+ +g +
  OPUNC10G07360.1 110 QFRGVRKRP-WGKWAAEIRDPV-RGvR 134
                      69*******.**********53.4432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-8109134IPR001471AP2/ERF domain
SMARTSM003800.0031110169IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-5110134IPR016177DNA-binding domain
PROSITE profilePS5103212.813110171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MCGGAILADL IPAPRSGQTK NKRRRSDDED FEAAFEEFDG GDDSEEVDEY DGMDAVDDDD  60
SEDGVVVLPP PPPFGDKPLC PVIPLERHGG GRGSRMPAAR RRGDGGGARQ FRGVRKRPWG  120
KWAAEIRDPV RGVRKRRAYA ATRSPSPSAT SEVTAASAST NSPAPAFAAF VGEPRSGGAK  180
STPTTSHTSQ PAPPATVASE SADDPEVFDP YDVHGGLTSY FAGGAYESLE SLFTHGGDSA  240
AVDQAASDHW PAGLWSFTDD GSFCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114136RKRPWGKWAAEIRDPVRGVRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0799361e-143AC079936.7 Oryza sativa Japonica Group chromosome X clone OSJNBb0061I18, complete sequence.
GenBankAK1102691e-143AK110269.1 Oryza sativa Japonica Group cDNA clone:002-163-C07, full insert sequence.
GenBankAP0149661e-143AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613362.26e-96ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0M7840.0A0A0E0M784_ORYPU; Uncharacterized protein
STRINGOPUNC10G07360.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151951415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-07ERF family protein