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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC09G03280.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 304aa MW: 34580.2 Da PI: 7.8254 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC09G03280.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.4 | 0.00024 | 156 | 175 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
+ Cp C k+Fsr nL+ H+
OPUNC09G03280.1 156 FACPVCCKTFSRYNNLQMHM 175
78*****************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MANPSKDHIF PNQRSLISQS SSPHNSLLKK EEIPLLSLLP SIHDHNKIHG CYKQEKEEEV 60
MEDVDISLQI GLPSPDPNSS VVDFTKSHLL GATATTSQEI DGDDDDDDHK VEVEREEEEE 120
EASDDLCLDY FSMGKLTKGK YWIPTPTQIL IGPTHFACPV CCKTFSRYNN LQMHMWGHGS 180
QYRRGPESLR GTQPAAMLRL PCFCCAAGCR NNVDHPRARP LKDFRTLQTH YKRKHCAKPF 240
ACRKCGKPLA VRGDWRTHEK NCGRRWHCAC GSDFKHKRSL KDHIRAFGRD HLERPPPGPL 300
LPLP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC090054 | 0.0 | AC090054.2 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence. |
| GenBank | AP006527 | 0.0 | AP006527.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0603H10. |
| GenBank | AP006727 | 0.0 | AP006727.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0645D04. |
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
