PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G00580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 20906.1 Da PI: 10.9419 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.6 | 6e-22 | 21 | 68 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g +KKA+ELS+LC aeva ++fs+ gk y + OPUNC09G00580.1 21 RIESEEARQVCFSKRRAGFFKKASELSILCSAEVAAVVFSPAGKAYSF 68 8*******************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.464 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.5E-31 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-27 | 13 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.14E-39 | 13 | 85 | No hit | No description |
PRINTS | PR00404 | 1.1E-20 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-25 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-20 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-20 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MTAAAARRRP SLGRQKIEIR RIESEEARQV CFSKRRAGFF KKASELSILC SAEVAAVVFS 60 PAGKAYSFGH PSVECLLDRF LSLPATGSGT GSASVVGELN RQYGELRAMV DAHKARRERA 120 EKQRTARSWM DPEAEVGRMA AEELVALGTK LVALQGGVAA RADQMLRDAL LVGRRPTTTR 180 APPPFFHLPH F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-16 | 12 | 102 | 1 | 91 | MEF2C |
5f28_B | 4e-16 | 12 | 102 | 1 | 91 | MEF2C |
5f28_C | 4e-16 | 12 | 102 | 1 | 91 | MEF2C |
5f28_D | 4e-16 | 12 | 102 | 1 | 91 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005789 | 1e-172 | AP005789.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0563F09. | |||
GenBank | AP005884 | 1e-172 | AP005884.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0598D02. | |||
GenBank | AP014965 | 1e-172 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-172 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611069.1 | 1e-107 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A0E0LYB9 | 1e-135 | A0A0E0LYB9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G00580.1 | 1e-135 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-25 | AGAMOUS-like 61 |