PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G19980.4
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 358aa    MW: 38156.6 Da    PI: 9.3274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G19980.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20167217155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+ +++g
  OPUNC08G19980.4 167 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFNTAEDAARAYDAAAVRFKG 217
                      68********.**********64....55**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-18167226No hitNo description
PfamPF008476.3E-13167216IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22168227IPR016177DNA-binding domain
PROSITE profilePS5103224.948168225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32168226IPR001471AP2/ERF domain
SMARTSM003805.7E-35168231IPR001471AP2/ERF domain
PRINTSPR003671.1E-11169180IPR001471AP2/ERF domain
PRINTSPR003671.1E-11191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDENFNAMLF LVRWDFTVSM VAGLSGGKLG LGTRVDRLPE ASDTGHHRGR HKRARASTPP  60
RHDDDPPPPP SPVVTGGEHG GGGGEWRATV LAEDVESAAI VAALTHVISS TAAEVTTAFP  120
PVTIAPPQRA ATATMFGQQV MQQPRGFPPL PSSSGSVATP PEQQPRPRYR GVRQRPWGKW  180
AAEIRDPVKA ARVWLGTFNT AEDAARAYDA AAVRFKGSKA KVNFPDEVAG ASIAAVQPPR  240
HHQHHAATSL PPPRLPLPPP PHLRPRFSLA GQSTTAAPAA AAVAPPREEF PDLSRYAHIL  300
QSGDLEYDFH AAVSAGLTST GQSSSSSSSM PPAPPSEDRR HEDSEYAKKP PFEYGPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22169228666ATERF1
3gcc_A2e-22169228666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418270.0AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660332.14e-86PREDICTED: uncharacterized protein LOC102713488
TrEMBLA0A0E0LXE50.0A0A0E0LXE5_ORYPU; Uncharacterized protein
STRINGOPUNC08G19980.30.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-26related to AP2 6