PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G07240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 295aa    MW: 29395.5 Da    PI: 5.6838
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G07240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.2e-061558442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ ++   ++ +C  +   lC  C  + H        H++vpl
  OPUNC08G07240.1 15 TACAVCGGV-ATVYCAADAAALCVPCDAAVHAAnplasrHDRVPL 58
                     57*****99.*********************66899999999986 PP
2CCT66.76.5e-23191234144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Re++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  OPUNC08G07240.1 191 REERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 234
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-101258IPR000315B-box-type zinc finger
PROSITE profilePS501199.4711258IPR000315B-box-type zinc finger
CDDcd000214.98E-71758No hitNo description
PROSITE profilePS5101716.479191233IPR010402CCT domain
PfamPF062031.9E-17191233IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MASDGSASPA SCGATACAVC GGVATVYCAA DAAALCVPCD AAVHAANPLA SRHDRVPLAV  60
AMAAASSGVY DHLFAPDDDA ASSWAAAAAA GAAVQGQGSP NDSSSSFTND SAGAGGGGGA  120
ERSLFDLLSD VDIMSCGGGG AGLASSFDGV AAPPLWLHPG QLAALTPWSP ADAVVVPTSA  180
AGAVAAAAAA REERVRRYRE KRKNRKFQKT IRYASRKAYA EARPRIKGRF VKRATAASSS  240
SDDDSTAAAG VSAGAAATEE NKFWLSFSDD GRADGVGFYM DSTTAAAAYG VVPTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648718.11e-125zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0E0LSV30.0A0A0E0LSV3_ORYPU; Uncharacterized protein
STRINGOPUNC08G07240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-14CONSTANS-like 5