PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 386aa MW: 41677.3 Da PI: 7.5101

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G19020.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	216	235	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OPUNC06G19020.1 216 FSCPVCYKTFNRYNNMQMHM 235 89*****************9 PP
2	zf-C2H2	14.1	0.00013	300	322	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ OPUNC06G19020.1 300 FMCRKCGKAFAVRGDWRTHEKNC 322 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.67E-5	212	238	No hit	No description
PROSITE profile	PS50157	9.743	216	243	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.8E-6	216	235	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.45	216	238	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	218	238	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.14E-6	284	320	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	296	320	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	300	320	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	300	320	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MGDPYTNFLR GYHHHHHRSQ PLHFPPPPPP YASAAASSSF SGLYSSYLHP PPPPSSPPIR 60 EALPLLSLTP STTHPPHHHR HDQDHHHTQE QKNSLGHGAT SCSNDVEKEA AATADDQAAE 120 VTVALHIGLP SPSPSDAAAA ASAGGNQSAA AEASAGGGSS RMEEEGDEEE EEEAAAAAAA 180 TATLPLGCAS IGIGKLTKGQ YWIPTPSQIL IGPTQFSCPV CYKTFNRYNN MQMHMWGHGS 240 QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH YKRKHGIKPF 300 MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG HAACGIDSFD 360 ADDLDDEPSS DLDHASASAA ATSRVG

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MGDPYTNFLR GYHHHHHRSQ PLHFPPPPPP YASAAASSSF SGLYSSYLHP PPPPSSPPIR  60
EALPLLSLTP STTHPPHHHR HDQDHHHTQE QKNSLGHGAT SCSNDVEKEA AATADDQAAE  120
VTVALHIGLP SPSPSDAAAA ASAGGNQSAA AEASAGGGSS RMEEEGDEEE EEEAAAAAAA  180
TATLPLGCAS IGIGKLTKGQ YWIPTPSQIL IGPTQFSCPV CYKTFNRYNN MQMHMWGHGS  240
QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH YKRKHGIKPF  300
MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG HAACGIDSFD  360
ADDLDDEPSS DLDHASASAA ATSRVG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071104	0.0	AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015693889.1	1e-174	PREDICTED: LOW QUALITY PROTEIN: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-127	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0E0LDH0	0.0	A0A0E0LDH0_ORYPU; Uncharacterized protein
STRING	OPUNC06G19020.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-113	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]