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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G07470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 346aa MW: 36463.9 Da PI: 7.1939 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.5e-20 | 172 | 220 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g OPUNC06G07470.1 172 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 220 9******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.0E-37 | 171 | 234 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 171 | 229 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.446 | 171 | 228 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 171 | 229 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.80E-31 | 172 | 228 | No hit | No description |
PRINTS | PR00367 | 6.0E-11 | 172 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-13 | 172 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 194 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAAIDLYKYQ LSSSSSSSSS DQELMKALEP FIRSASPTST STSISTPFSY SSSSISTTTP 60 FSYSSPLPQE SYYVPPSSSY AAIPPPPPAT ATATSFSELP PLPPSSSSIA SPANAAAVGL 120 AHLGPEQIQQ IQVQFLMQQR GMAASAAAYL GPRAQPMKQA GVAPSAGGGK MYRGVRQRHW 180 GKWVAEIRLP KNRTRLWLGT FDTAEDAALA YDKAAFRLRG DAARLNFPTL RRGGAHLAGP 240 LHASIDAKLT AICHSLATAP PAASSKKVAT AAHPDSPKGS ASTTTTTSEG DESAISACSP 300 PLPPPPPPAL PEMANLDFTE APWDESDAFH LYKCPSWEID WDSILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 169 | 228 | 3 | 63 | ATERF1 |
3gcc_A | 3e-22 | 169 | 228 | 3 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644288.1 | 1e-137 | ethylene-responsive transcription factor RAP2-13 | ||||
Swissprot | Q8H1E4 | 3e-59 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0E0L9G9 | 0.0 | A0A0E0L9G9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G07470.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-45 | related to AP2 4 |
Publications ? help Back to Top | |||
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