PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16280.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 346aa    MW: 37302.9 Da    PI: 6.5579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17180227555
              AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      GVr ++ +g+++AeIrd + ng  +r++lg+f t+e+Aa a+++a+++ +g
  OPUNC05G16280.1 180 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFNTPEQAALAYDQAALSVRG 227
                      9*****.**********44465..***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.705177235IPR001471AP2/ERF domain
PRINTSPR003671.5E-7178189IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-20179236IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-26180236IPR001471AP2/ERF domain
SMARTSM003807.9E-29180241IPR001471AP2/ERF domain
PfamPF008477.6E-12180227IPR001471AP2/ERF domain
CDDcd000181.73E-22180235No hitNo description
PRINTSPR003671.5E-7201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEPNYSDYHP NGVPIDAYYE HGYGHDGHLD DHGHGHHLIP SCYSTTTTSH PEPSYSYCNW  60
SFLHADATAT SSSESSASGS SGAAHIVANT ITTGASTAFV RQLHFGGEYY DDETADISAL  120
MEAASISCWT NGGGASTSQT GSMEGVEELV RRAAAASAPD GANDMNGSSD KEAAARPLIG  180
VRKRPWGKYA AEIRDSTRNG ARVWLGTFNT PEQAALAYDQ AALSVRGPGA VLNYPLHRVR  240
ESLRTLELAA AASESPVLAL KRRHRIRKRS TTKKTPAGKE ADETPATTSE GKKKRQVNTT  300
SHRHGKQNQT SSPCVLELED LGTDYLEELL ALSEEQRTPH RPLPIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22180237865ATERF1
3gcc_A1e-22180237865ATERF1
5wx9_A2e-221802351772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306020.0AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638626.11e-154ethylene-responsive transcription factor ERF094
TrEMBLA0A0E0L3700.0A0A0E0L370_ORYPU; Uncharacterized protein
STRINGOPUNC05G16280.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-43ethylene response factor 1