PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G11600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 19718.1 Da PI: 7.2641 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 45 | 93 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +grW+AeIrdp++ +r++lg++ taeeAa+a++ a++ ++g OPUNC05G11600.1 45 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATAEEAARAYDVAARDIRG 93 9*******.**********954...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.895 | 44 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 44 | 102 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.8E-14 | 44 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 44 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-34 | 44 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 45 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.17E-27 | 45 | 100 | No hit | No description |
PRINTS | PR00367 | 2.8E-11 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MCGGAIIADF VPPTAAADAI LSAAGDESSF AAAAKAPAPG RKTAYRGIRR RPWGRWAAEI 60 RDPRKGARVW LGTYATAEEA ARAYDVAARD IRGAKAKLNF PPPIGAAAPP AQPPKKRRRA 120 ATAANHQQQQ ESSGSSSASS LPPTPPPAAD RQLRECMSGL EAFLGLEEEE DDAADGEPWD 180 AVDMMLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 45 | 101 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100184 | 1e-178 | AK100184.1 Oryza sativa Japonica Group cDNA clone:J023031H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638395.1 | 2e-74 | ethylene-responsive transcription factor ERF071 | ||||
Swissprot | P42736 | 6e-34 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0E0L1J4 | 1e-128 | A0A0E0L1J4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G11600.1 | 1e-129 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-19 | ERF family protein |