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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G31000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 471aa MW: 52464.9 Da PI: 5.3929 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109 | 3.5e-34 | 152 | 242 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+ye+++d+ ++++isw gnsfvv+d + fa +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkkell+ OPUNC03G31000.1 152 FLSKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKELLK 236 9****************************************************************999.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +ikr++ OPUNC03G31000.1 237 TIKRRR 242 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.1E-37 | 148 | 241 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.3E-58 | 148 | 241 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.94E-34 | 148 | 241 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.2E-30 | 152 | 241 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 152 | 175 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 190 | 202 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 191 | 215 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 203 | 215 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MEHEDEKLIE RSPSPLILRL SLVILDHLNS THFDIFANFS ERQDRSRLNS FGGGRYPIFF 60 CQHRHSHRSF KFFCFVKWLC DLFIFLCYSI ALVGWLVMNP LRVIVKEEEL DFAAAAAAAA 120 AAGEGSPSSW AVGVMELPRP MEGLGEAGPP PFLSKTYEVV DDPGTDTVIS WGFAGNSFVV 180 WDANAFAAVL LPRYFKHSNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG KKELLKTIKR 240 RRPPPSSPSS SSSSSSSSQQ QQPAAVCLEV GQFGRDGEVN RLQRDKSVLI AEVVKLRQEQ 300 QTTRAQMQAM EERISAAELK QQQMTVFLAR AMKNPGFLQM LVDRQGQHGG RNRELEDALS 360 KKRRRPIEYL LTRNGETGAA GESAAVLAAD VVAEPEDDTT PRGEVGSRHG GGDTESFWMQ 420 LLSLGLEEKQ REGAAAGQES NSGGADVDNN EEDDDDDVDV LVQSIYHLSP K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-27 | 133 | 241 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-27 | 133 | 241 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-27 | 133 | 241 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 240 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY998118 | 0.0 | AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628945.1 | 0.0 | heat stress transcription factor A-2a | ||||
Swissprot | Q84MN7 | 0.0 | HFA2A_ORYSJ; Heat stress transcription factor A-2a | ||||
TrEMBL | A0A0E0KIX5 | 0.0 | A0A0E0KIX5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G31000.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-87 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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