PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G06400.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 289aa    MW: 31171.1 Da    PI: 6.505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G06400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79e-21111161256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  OPUNC03G06400.1 111 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRGE 161
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-34110170No hitNo description
PROSITE profilePS5103223.696111168IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-23111169IPR016177DNA-binding domain
SMARTSM003806.1E-39111174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-33111169IPR001471AP2/ERF domain
PRINTSPR003672.4E-11112123IPR001471AP2/ERF domain
PfamPF008476.4E-15112161IPR001471AP2/ERF domain
PRINTSPR003672.4E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MATTVDWCGR GSNLPAAMYD MVVDSKQLMG ALAPSMVSFS YPCSDSGEQS SSSLLAGANY  60
LTPAQVLHVQ AQLQRLRRPG AASGCLAAAP QPMKRHGSVA AAIPARPPVK LYRGVRQRHW  120
GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDSAAFRLRG ESARLNFPEL RRGGAHLGPP  180
LHAAVDAKLH AICHGMDLPQ PQTQSNVTTT TNTPSSFFSS ESPVVKSEPV CSASESSSSA  240
DCDVSSTGSS DVVPEMQLLD FSEAPWDESE SFLLHKYPSL EIDWDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21110168160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-21110168463ATERF1
3gcc_A7e-21110168463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2191850.0AC219185.1 Oryza officinalis clone OO__Ba0118D01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629130.11e-176ethylene-responsive transcription factor RAP2-13
SwissprotQ9FJQ27e-61ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A0E0K9X40.0A0A0E0K9X4_ORYPU; Uncharacterized protein
STRINGOPUNC03G06400.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-46related to AP2 4
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]