PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G05900.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 333aa    MW: 36040.6 Da    PI: 4.3243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G05900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-19104153255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f tae Aa a++ a+++++g
  OPUNC03G05900.1 104 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFTTAEAAALAYDDAARAIRG 153
                      69*******.**********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-17103161No hitNo description
SMARTSM003806.0E-37104167IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-22104162IPR016177DNA-binding domain
PfamPF008471.3E-11104153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31104162IPR001471AP2/ERF domain
PROSITE profilePS5103224.012104161IPR001471AP2/ERF domain
PRINTSPR003671.0E-10105116IPR001471AP2/ERF domain
PRINTSPR003671.0E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV VTAGHEWPGG KAKKTARADD FEAAFREFDN DSDDDEGDYD  60
EMMGEEEEEE ATSEHKPFVF RAASTKKPRK AAAAASSRRR KPAQYRGVRR RPWGKWAAEI  120
RDPVKGVRVW LGTFTTAEAA ALAYDDAARA IRGNRAKLNF PSTTPDTRKR GRATAAAPAV  180
MATPVINLVE EEEVQEVAAA MASIKYEPET SESSESNALP DFSWQGMSAS DEAIAAAHPV  240
LDVDSDDLAK KRPRTEPEDA TTDSGSGDDT DALFDALLFA DQYNYFNGGA YESLDSLFSA  300
DAVQSAAATD QDMGLWSFDD GCCLVDVEGR LSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21101161263ATERF1
3gcc_A2e-21101161263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198110RRKPAQYRGVRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2262660.0AC226266.1 Oryza minuta clone OM__Ba0237O02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632219.11e-126ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0K9Q60.0A0A0E0K9Q6_ORYPU; Uncharacterized protein
STRINGOPUNC03G05900.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.18e-22ERF family protein