PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC03G05860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 312aa MW: 34952 Da PI: 6.5504 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 121 | 171 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrdp++ +r++lg++g+aeeAa a+++ +++++g OPUNC03G05860.1 121 KKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 171 59********.7*********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.04E-28 | 121 | 179 | No hit | No description |
SMART | SM00380 | 1.1E-33 | 122 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-28 | 122 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-12 | 122 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 122 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 122 | 180 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-7 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MCGGAILAEL TPARVHRRLT VSEILPETTT PPAERRTTTT RPKRKAASAS RSYDVDFEAE 60 FELFEDDDDD EEAEFEISED DEDGDETLAV SFSSDVSSSS RPLRRVAAAA GRRKASKEEK 120 KKYRGVRRRP SGRFAAEIRD PKKGRRVWLG TYGSAEEAAM AYDREARRIR GKCARLNFPG 180 DLDGSPRRRN LPCWTIDLNL PAPAAVSDDD DAMAVDAGRA GQRGSEPAES KIKELIKQGP 240 HNDAKFKLTE DTSSSKTRVS MALQLQYYAA LVAECDREME EIAAVERDLE RRRRQVLEHR 300 GHLVRQASLL LN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-20 | 121 | 179 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 121 | 179 | 4 | 63 | ATERF1 |
3gcc_A | 1e-19 | 121 | 179 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 129 | RKASKEEKKKYRGVRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC229740 | 1e-149 | AC229740.1 Oryza minuta clone OM__Ba0228D20, complete sequence. | |||
GenBank | AC229761 | 1e-149 | AC229761.1 Oryza minuta clone OM__Ba0159K04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651102.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A0E0K9Q1 | 0.0 | A0A0E0K9Q1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G05860.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13664 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72360.1 | 9e-23 | ERF family protein |