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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G30250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 336aa MW: 36123.2 Da PI: 7.7472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.9e-20 | 165 | 214 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g OPUNC02G30250.1 165 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 214 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.19E-31 | 164 | 222 | No hit | No description |
PROSITE profile | PS51032 | 23.077 | 165 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 165 | 223 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-38 | 165 | 228 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 165 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 166 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-11 | 166 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-11 | 188 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAAAIDMYKY NTSTHQIASS DQELMKALEP FIRSASSSSA SSPYHHYYSS SPSMSQDSYM 60 PTPSYPTSSI TTAAATTSSF SQLPPLYSSQ YHASPAASAT NTMGLTHLGP AQIQQIQAQF 120 LAQQQQQRGL AGAFLGPRGQ PMKQSGSPPR AGPFAAVAGA AQSKLYRGVR QRHWGKWVAE 180 IRLPKNRTRL WLGTFDTAED AALAYDKAAF RLRGDLARLN FPTLRRGGAH LAGPLHASVD 240 AKLTAICQSL ATTSSSKNTP AESAASAAEP ESPKCSASTE GEDSVSAGSP PPPTPLSPPV 300 PEMEKLDFTE APWDESETFH LRKYPSWEID WDSILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 161 | 222 | 1 | 63 | ATERF1 |
3gcc_A | 1e-21 | 161 | 222 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105877 | 0.0 | AK105877.1 Oryza sativa Japonica Group cDNA clone:001-204-C05, full insert sequence. | |||
GenBank | AK105991 | 0.0 | AK105991.1 Oryza sativa Japonica Group cDNA clone:001-205-H01, full insert sequence. | |||
GenBank | AP004119 | 0.0 | AP004119.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1288_G09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625871.1 | 1e-167 | ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0E0K5C2 | 0.0 | A0A0E0K5C2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G30250.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 3e-49 | related to AP2 4 |