PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G20550.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 342aa    MW: 35977.7 Da    PI: 6.8879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G20550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-174999155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  OPUNC02G20550.1 49 TRYRGVRRRP-WGRFAAEIRDPA----SkERRWLGTFDTAEQAACAYDVAARAMRG 99
                     68********.**********83....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-104999IPR001471AP2/ERF domain
CDDcd000181.29E-2749108No hitNo description
Gene3DG3DSA:3.30.730.102.2E-3050107IPR001471AP2/ERF domain
SMARTSM003803.5E-3450113IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2150108IPR016177DNA-binding domain
PROSITE profilePS5103223.18250107IPR001471AP2/ERF domain
PRINTSPR003673.7E-95162IPR001471AP2/ERF domain
PRINTSPR003673.7E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDEAANAQLY GHTHPHSHHH RSKRPSPGGG GSASLGADGG GGGGSLSGTR YRGVRRRPWG  60
RFAAEIRDPA SKERRWLGTF DTAEQAACAY DVAARAMRGT RARTNFPVPA TAAGFPGVGG  120
GGGCWPWVNI PPQGAVASHQ QPLNTFLLHN LLMSSSPHGC LLLHHAGHGH AHAHAHSHSH  180
GRAHNPTRPP ISAPPPPPPA AASSSTTAPA TTIGATATSA PGADDDAWGF LLRREPPEAG  240
LLQDVLHGFY PTRRPHDDDD DVDVRDAGPA PKLERPYEAT SRVFSAWGVV EDCDDGDGDG  300
VDDDYRGFPM MPQGLLEDVI QCPPYMEVLA APSGVGRVSR TG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1947108264ATERF1
3gcc_A1e-1947108264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040230.0AP004023.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1126_D09.
GenBankAP0040790.0AP004079.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1067_B01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624483.11e-114ethylene-responsive transcription factor ABI4
TrEMBLA0A0E0K1W20.0A0A0E0K1W2_ORYPU; Uncharacterized protein
STRINGOPUNC02G20550.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-12ERF family protein