PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 334aa MW: 37326.4 Da PI: 7.4477

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G34140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.5	1.8e-21	162	222	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ OPUNC01G34140.1 162 RQRWTPTPMQLQILENIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 222 89***************99************************************97 PP
2	Wus_type_Homeobox	102.8	2.3e-33	161	224	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq OPUNC01G34140.1 161 ARQRWTPTPMQLQILENIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 224 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-18	157	227	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.143	158	223	IPR001356	Homeobox domain
SMART	SM00389	1.0E-14	160	227	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-19	161	225	IPR009057	Homeodomain-like
Pfam	PF00046	3.0E-19	162	222	IPR001356	Homeobox domain
CDD	cd00086	1.57E-14	162	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MYPSLSLRHF PPLLPSPNPP PHLSLPGHRL LLLLLLLLPR CRVLLLLPVV VVAAIGTAPW 60 SGPRGEPGAM EWDKAKASSA AAAGEAVDDR GGGEGLGYVK VMTDEQMEVL RKQISIYATI 120 CEQLVEMHRA LTAQQDSIAG MRLGNLYCDP LMVPGGHKIT ARQRWTPTPM QLQILENIFD 180 QGNGTPSKQK IKEITSELSQ HGQISETNVY NWFQNRRARS KRKQAALPNN NAESEAEADE 240 ESPTDKKPKS DRPLHQNIAM RDHNTERISE MHHFDTEHEQ IRRMMYASND SSSRSSGNLG 300 QMSFYDNVMS NPRIDHFLGK VESPGSFPHM RSVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	223	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068585	0.0	AK068585.1 Oryza sativa Japonica Group cDNA clone:J013151P17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644908.1	1e-169	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-165	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0E0JQB2	0.0	A0A0E0JQB2_ORYPU; Uncharacterized protein
STRING	OPUNC01G34140.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-69	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]