PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G20610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 424aa    MW: 44573.3 Da    PI: 5.1275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G20610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-13243288555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f++Lr+llP++      K +K ++L  A +Y+ksL+
  OPUNC01G20610.1 243 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 288
                      7789*********************9.....699***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16238305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10243288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16243305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-12243291No hitNo description
SMARTSM003532.4E-12244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDEVWCSLDI AAGIHQPPPP DLHDPTFWPA FADCAASFIA GGDNACFDEL MAGGSGGNRM  60
EGMVVAMDDD DDGSGFLVGE AEQLMLSSSP SSLSSGRSLS IDSAGSMSSF SLDAAAALAS  120
VAVPQSYAAP ASAPPVAHGM FDDHDDAIMR AMMAVISSSS ASPSSSGCSA SSPTPFSRDS  180
GAHRPAMAQQ PRGGNGGNVV VKSSSSSSLA VPPDQKPGGR GRQHEEARAA AAACATNSSQ  240
LYHMMSERKR REKLNDSFHT LRSLLPPCSK KDKTTVLINA AKYLKSLETE ITELERKNTK  300
LEEHIAGGGG ADAAMRARRA QQRAKVQISK ADSQLVNLTV MVMVECDVVE LVLHILECLK  360
WMKEISVLSI DADTYSPQLL LKAIASIKLQ IMGGDWNEAS FHEAMTKVAN DATLSCAPLA  420
LTAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251ERKRRE
2247252RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063330.0AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630527.10.0putative transcription factor bHLH041
TrEMBLA0A0E0JKD00.0A0A0E0JKD0_ORYPU; Uncharacterized protein
STRINGOPUNC01G20610.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-25bHLH family protein