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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G20490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 396aa MW: 43651.6 Da PI: 5.9208 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.5 | 1.8e-32 | 87 | 181 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswseng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 F+ k+ye++ d++++ ++sw +g +sfvv+d++ +a vLp++Fkh nf+SFvRQLn+YgF+kv+ ++ weF+++ F g+k+l OPUNC01G20490.1 87 FVAKTYEMVADAATDAVVSWGPDGsgSSFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVNPDR---------WEFANEAFLSGQKHL 171 9********************554449****************************************999.........*************** PP XXXXXXXXXX CS HSF_DNA-bind 94 lekikrkkse 103 l++ikr++ + OPUNC01G20490.1 172 LKNIKRRRVS 181 ******9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.17E-31 | 83 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.2E-34 | 83 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.0E-54 | 83 | 178 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.4E-29 | 87 | 178 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 87 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 127 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 128 | 152 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 140 | 152 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MLKPQHLAAP RIHMASSSLC RLLIPRPTTR RFSGDPAGAE GMAVAAPVKR EVKPEAEAEA 60 GAGAGWGDDL GVPRPMEGLG EAGPAPFVAK TYEMVADAAT DAVVSWGPDG SGSSFVVWDP 120 HALAAGVLPR FFKHANFSSF VRQLNTYGFR KVNPDRWEFA NEAFLSGQKH LLKNIKRRRV 180 SKPLMDSQLR NKTSVVFGQP EATGEVVSLK RDREALRAEV IMLKQQYNAC KSQLIAMEEM 240 VQNIERRQQQ TISFFAKVLT NPVFVQQVLL NYVNKNGLRG AAKRQRLMEN EEQHADLPLN 300 KGMEAASVME AEVSSGSTGG CGKVGKEETT PKCYAHNIDN MCDDVWEELD ALPETGMEQE 360 DKAGIGSFDV EEFVGRPCGW VDDCPYLVEP MQFVEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-23 | 78 | 178 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-23 | 78 | 178 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-23 | 78 | 178 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 177 | LKNIKRR |
2 | 175 | 179 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064271 | 0.0 | AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631502.1 | 0.0 | heat stress transcription factor A-6a | ||||
Swissprot | Q657C0 | 0.0 | HFA6B_ORYSJ; Heat stress transcription factor A-6a | ||||
TrEMBL | A0A0E0JKB1 | 0.0 | A0A0E0JKB1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G20490.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 7e-77 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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