PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G05810.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 874aa    MW: 98304.8 Da    PI: 8.4968
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G05810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-094678337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      W+++E  ++++a +++G++ Wk++++++g g+++
  OPUNC01G05810.1 46 QWSKDELMRFYEAYRRHGKN-WKKVSAYVG-GKSA 78
                     6*****************99.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.1824299IPR017884SANT domain
SuperFamilySSF466893.59E-94289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-44681IPR009057Homeodomain-like
PfamPF002497.6E-84679IPR001005SANT/Myb domain
CDDcd001674.66E-54778No hitNo description
SMARTSM011355.2E-32486587IPR033471DIRP domain
PfamPF065841.6E-29486586IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MGPAKGSRTI TKITIKGYDD RQHDEDPNSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR  60
RHGKNWKKVS AYVGGKSADT VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSDESKS  120
HKGSDQTVKA SGKVRKRGEA TGQKEKEAPH AHRSYHERRT SGLSSFKKRY YGELVKNIPR  180
HPSGKRTPRV PVIVPADMNV AHAGIPEKEN AVNSTKKASG ATNNELECSP DGSPRISESD  240
KFVQGQTFLE TKGTGSLKKR RIEHSMEQGQ TIKDEHETTM VAKEGKDLTE YQRLTNLFSP  300
DEMLVLDVLE SLVTVPSKIS EPKINIPSGT LGRDNSALSH RREEGPSVKR SKQGKQVGEC  360
SASKTRNTRR KKLIAEEVPT EGVTSNHLDL PEEHQVDATE CVLNSDLERG TVGLPESTAN  420
ISTKIPDLPS QLKPEINMSR RSKRKSKSPC GSKYVFCNGT DNLQARRLQH CLSSESLRRW  480
CTYEWFYSAV DYPWFMDNEF VNYLNFANLS HLSRLTRSEW STIRSSLGKP RRFSDHFLVA  540
EKDKLENYRK KVRQYYALLS EDSWDSLPPD LARPFSIGQQ VIVRHPSMRE LCDGKVVLMA  600
RDRYKVQFDR PDLGVDEVKD TDCMPVNWLD NLPDDLKKRS FLSNNSHNRV EVEQIPKLTS  660
KENWDHISGE AEPSKTMHIT SDEQVEVEIA VDIERLSNKS TSGNCGPLQP LQSVDDIVRS  720
RGLSEHRNGH NDELDSYITS FVQMSLAQAK QMVDEAMKEI SENGKNSLEK TGISNEAADC  780
KGPESESVAD SELPRNLIFN CIATLLAIKH FSEGRHPPPN IAGVLERACL MLRPSCAENL  840
PIYNDIENFI AVIKNQILAL VPSASSNGRV PMYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345352PSVKRSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619153.10.0protein ALWAYS EARLY 2 isoform X2
TrEMBLA0A0E0JF480.0A0A0E0JF48_ORYPU; Uncharacterized protein
STRINGOPUNC01G05810.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.25e-60DNA binding