![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA07G25780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23654.5 Da PI: 6.7903 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.3e-19 | 70 | 120 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g+ ONIVA07G25780.1 70 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 120 69*******.**********843...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.26E-15 | 69 | 128 | No hit | No description |
SMART | SM00380 | 3.5E-37 | 70 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.421 | 70 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-13 | 70 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 70 | 128 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 71 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MCGGAIISDF IPQREAHRAA TGSKRALCAS DFWPSASQEA ADFDHLTAPC TFTPDQAAEE 60 PTKKRERKTL YRGIRRRPWG KWAAEIRDPA KGARVWLGTF ATAEAAARAY DRAARRIRGA 120 KAKVNFPNED PPLDDPAADG HSHGGAAIPC REFMDYDAVM AGFFHQPYVV ADGVPAVPAE 180 EAPTVAYVHH HLPPQPQQDA GLELWSFDNI HTAVPM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 71 | 127 | 6 | 63 | ATERF1 |
3gcc_A | 2e-22 | 71 | 127 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 63 | 77 | KRERKTLYRGIRRRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY297447 | 0.0 | AY297447.1 Oryza sativa (japonica cultivar-group) AP2 domain transcription factor EREBP mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644689.1 | 1e-158 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | O22259 | 6e-39 | ERF71_ARATH; Ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A0D3GUW9 | 1e-157 | A0A0D3GUW9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0AP82 | 1e-157 | A0A0E0AP82_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0I5L4 | 1e-157 | A0A0E0I5L4_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YPV8 | 1e-157 | A2YPV8_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6ZDW4 | 1e-157 | Q6ZDW4_ORYSJ; AP2 domain transcription factor EREBP | ||||
STRING | OGLUM07G26170.1 | 1e-158 | (Oryza glumipatula) | ||||
STRING | ONIVA07G25780.1 | 1e-158 | (Oryza nivara) | ||||
STRING | OBART07G26160.1 | 1e-158 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 6e-28 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|