PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G00600.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 637aa    MW: 67379.5 Da    PI: 7.3363
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G00600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-12285341155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  ONIVA07G00600.1 285 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 341
                      78*******************77776664346655.77******************98 PP
2AP247.15.9e-15386435355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  ONIVA07G00600.1 386 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 435
                      9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.01E-17285349No hitNo description
PfamPF008471.1E-9285341IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-14285350IPR016177DNA-binding domain
SMARTSM003808.3E-23286355IPR001471AP2/ERF domain
PROSITE profilePS5103217.359286349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12286350IPR001471AP2/ERF domain
PRINTSPR003673.7E-6287298IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18384444IPR016177DNA-binding domain
CDDcd000184.38E-23384445No hitNo description
SMARTSM003801.9E-33385449IPR001471AP2/ERF domain
PROSITE profilePS5103219.296385443IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18385443IPR001471AP2/ERF domain
PfamPF008473.4E-10386435IPR001471AP2/ERF domain
PRINTSPR003673.7E-6425445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MTNSNNGNGG TNAAASGWLG FSLSPHMASS TMDEHHHVHH HQQQQQQQQQ HHQQQQHGLF  60
FPSVTTAAAA AAYGLAGDVV AATNGYYSQL ASMPLKSDGS LCIMEALRRT DQDHHGPKLE  120
DFLGAAQPAM ALSLDNTSSF YYGGGGAAAA GHGQHGYLQA CDLYGGPAAP SLVTAADEEA  180
AAAAAAMASW VAARGAATAY ATGAADANAA ENVLPSATAA QHLHHPLALS MSSGSLSSCI  240
TAGEYGMAAV AAADGGRKRG GAGGGGQKQP VHHRKSIDTF GQRTSQYRGV TRHRWTGRYE  300
AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL EDYQEELEEM  360
KNMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD LYLGTFSTQE  420
EAAEAYDVAA IKFRGLNAVT NFDITRYDVD KIMASNTLLP ADLARRNAAT TTSKDDHSAA  480
AAGAIVSVHS AADIAVADTL WKATTAPRQQ QQHHDDVVLS GADQAAFSVL HDLVAVDAAA  540
AHQQQQQQQH MSMSAASSLV TSLSNSREGS PDRGGGLSML FAKPSPAVAA SAQQQASTKL  600
MAAPLPLGSW VSSPPASARP PAVSIAHMPL FAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098480.0AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882597.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0HW850.0A0A0E0HW85_ORYNI; Uncharacterized protein
STRINGONIVA07G00600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-128AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]